X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52980.1M Sodium MES pH 6.5, 10% PEG 20000, Cryo: 10% Ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1943.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.286α = 90
b = 68.286β = 90
c = 48.383γ = 120
Symmetry
Space GroupP 64

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A0.9793NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.82501000.1070.08734.212.11167411674
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.821.8999.90.5020.4953.355.41146

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.8237.451165555499.910.2010.2010.20.234RANDOM23.033
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.290.150.29-0.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.008
r_dihedral_angle_3_deg16.003
r_dihedral_angle_4_deg15.014
r_dihedral_angle_1_deg6.094
r_scangle_it3.04
r_scbond_it2.166
r_mcangle_it1.578
r_angle_refined_deg1.462
r_mcbond_it0.978
r_nbtor_refined0.315
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.008
r_dihedral_angle_3_deg16.003
r_dihedral_angle_4_deg15.014
r_dihedral_angle_1_deg6.094
r_scangle_it3.04
r_scbond_it2.166
r_mcangle_it1.578
r_angle_refined_deg1.462
r_mcbond_it0.978
r_nbtor_refined0.315
r_nbd_refined0.203
r_symmetry_vdw_refined0.186
r_symmetry_hbond_refined0.186
r_xyhbond_nbd_refined0.113
r_chiral_restr0.101
r_bond_refined_d0.012
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms932
Nucleic Acid Atoms
Solvent Atoms99
Heterogen Atoms8

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CBASSdata collection
HKL-2000data reduction
HKL2Mapphasing