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AmpC beta-lacamase with bound covalent oxadiazole inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 291 pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.62 53.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.389 α = 90 b = 91.104 β = 90 c = 82.534 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 92.2 0.126 5.6 3.5 52485
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 71 0.5 2.5 4001
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 30 52067 2642 91.95 0.195 0.193 0.239 0.2249 RANDOM 26.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.41 -0.7 -1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.805 r_dihedral_angle_3_deg 14.539 r_dihedral_angle_4_deg 13.388 r_dihedral_angle_1_deg 6.408 r_scangle_it 2.706 r_scbond_it 1.792 r_angle_refined_deg 1.469 r_mcangle_it 1.078 r_mcbond_it 0.686 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.805 r_dihedral_angle_3_deg 14.539 r_dihedral_angle_4_deg 13.388 r_dihedral_angle_1_deg 6.408 r_scangle_it 2.706 r_scbond_it 1.792 r_angle_refined_deg 1.469 r_mcangle_it 1.078 r_mcbond_it 0.686 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.217 r_nbd_refined 0.21 r_symmetry_hbond_refined 0.186 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5600 Nucleic Acid Atoms Solvent Atoms 621 Heterogen Atoms 52
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction