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1.8A Crystal Structure of the PA2412 protein from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5 277 Microbatch 1:1 with 33-37% polyethylene propoxylate 426, 50 mM Succinate, pH 5.0, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.5 50.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.543 α = 90 b = 51.543 β = 90 c = 32.595 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD ADSC QUANTUM 4 2005-07-30 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC QUANTUM 210 2005-11-20 M MAD 3 1 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F2 CHESS F2 2 SYNCHROTRON CHESS BEAMLINE F2 0.97910, 0.97934, 0.9641 CHESS F2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.8 27.5 96.3 0.072 13.9 7822 -3 19.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.8 1.86 72.6 0.285 2.3 574
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 27.5 7809 359 96.5 0.194 0.192 0.1915 0.232 0.2289 RANDOM 23.293
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.76 -1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.937 r_dihedral_angle_4_deg 16.199 r_dihedral_angle_3_deg 12.546 r_dihedral_angle_1_deg 5.677 r_scangle_it 2.703 r_scbond_it 1.727 r_angle_refined_deg 1.265 r_mcangle_it 1.222 r_mcbond_it 0.784 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.937 r_dihedral_angle_4_deg 16.199 r_dihedral_angle_3_deg 12.546 r_dihedral_angle_1_deg 5.677 r_scangle_it 2.703 r_scbond_it 1.727 r_angle_refined_deg 1.265 r_mcangle_it 1.222 r_mcbond_it 0.784 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.193 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.149 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 509 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CHESS data collection HKL-2000 data reduction SnB phasing