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Crystal Structures of the Luciferase and Green Fluorescent Protein from Renilla Reniformis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1~M HEPES, 10% v/v isopropanol with 6mg/ml benzyl-coelenterazine, 15% w/v PEG 3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 46.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.776 α = 90 b = 75.652 β = 76.48 c = 89.185 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 100 58344
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.79 86.71 58344 3119 97.55 0.19698 0.19523 0.1989 0.22941 0.2333 RANDOM 18.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 0.04 0.13 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.843 r_dihedral_angle_4_deg 16.897 r_dihedral_angle_3_deg 12.784 r_dihedral_angle_1_deg 5.642 r_scangle_it 1.994 r_scbond_it 1.395 r_angle_refined_deg 1.212 r_angle_other_deg 0.878 r_mcangle_it 0.858 r_mcbond_it 0.776
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.843 r_dihedral_angle_4_deg 16.897 r_dihedral_angle_3_deg 12.784 r_dihedral_angle_1_deg 5.642 r_scangle_it 1.994 r_scbond_it 1.395 r_angle_refined_deg 1.212 r_angle_other_deg 0.878 r_mcangle_it 0.858 r_mcbond_it 0.776 r_nbd_refined 0.212 r_nbd_other 0.193 r_nbtor_refined 0.179 r_symmetry_vdw_other 0.169 r_symmetry_vdw_refined 0.139 r_xyhbond_nbd_refined 0.125 r_mcbond_other 0.122 r_symmetry_hbond_refined 0.116 r_nbtor_other 0.082 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4860 Nucleic Acid Atoms Solvent Atoms 476 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement