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Reduced mutant D98N of AfNiR exposed to nitric oxide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 298 7-12% polyethylene glycol 4000, 75 mM acetamide and 10 mM sodium acetate buffer, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.08 40.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.423 α = 90 b = 102.422 β = 90 c = 146.123 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 30 0.101 7.3 111501
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 0.52 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 83.92 105766 5575 99.9 0.15055 0.14949 0.17035 0.1827 RANDOM 19.013
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.35 -0.54 -0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.366 r_dihedral_angle_4_deg 18.674 r_dihedral_angle_3_deg 11.648 r_dihedral_angle_1_deg 6.766 r_scangle_it 2.809 r_scbond_it 1.819 r_angle_refined_deg 1.27 r_mcangle_it 1.073 r_mcbond_it 0.703 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.366 r_dihedral_angle_4_deg 18.674 r_dihedral_angle_3_deg 11.648 r_dihedral_angle_1_deg 6.766 r_scangle_it 2.809 r_scbond_it 1.819 r_angle_refined_deg 1.27 r_mcangle_it 1.073 r_mcbond_it 0.703 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.211 r_nbd_refined 0.19 r_symmetry_hbond_refined 0.124 r_xyhbond_nbd_refined 0.115 r_chiral_restr 0.092 r_metal_ion_refined 0.021 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7687 Nucleic Acid Atoms Solvent Atoms 998 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing