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Oxidized wild type AfNiR exposed to NO (nitrite bound)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 298 6-11% PEG 4000, 100mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.04 39.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.111 α = 90 b = 101.833 β = 90 c = 145.508 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 30 0.087 6.1 122173
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.66 0.422 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.58 30 110174 5827 93.11 0.16228 0.16125 0.1631 0.18182 0.1847 RANDOM 19.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.99 -0.07 -1.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.805 r_dihedral_angle_4_deg 18.588 r_dihedral_angle_3_deg 12.243 r_dihedral_angle_1_deg 6.837 r_scangle_it 2.667 r_scbond_it 1.746 r_angle_refined_deg 1.287 r_mcangle_it 1.013 r_mcbond_it 0.657 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.805 r_dihedral_angle_4_deg 18.588 r_dihedral_angle_3_deg 12.243 r_dihedral_angle_1_deg 6.837 r_scangle_it 2.667 r_scbond_it 1.746 r_angle_refined_deg 1.287 r_mcangle_it 1.013 r_mcbond_it 0.657 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.22 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.114 r_symmetry_hbond_refined 0.1 r_chiral_restr 0.087 r_bond_refined_d 0.009 r_metal_ion_refined 0.006 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7687 Nucleic Acid Atoms Solvent Atoms 836 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing