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Crystal structure of a member of enolase superfamily from Burkholderia pseudomallei K96243
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 100mM Bis-Tris-HCl, pH 5.5, 45% MPD, 200mM Ammonium acetate, 10% Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.45 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.771 α = 90 b = 146.771 β = 90 c = 85.531 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm MIRRORS 2006-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97960 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 50 88.8 0.09 0.071 5.2 3.7 38379 38379 -5 47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.34 2.42 86.2 0.6 0.42 0.9 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.34 20 33656 33656 1076 90.73 0.2114 0.2114 0.20937 0.205 0.27451 0.2703 RANDOM 51.783
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.6 -1.6 3.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.527 r_dihedral_angle_3_deg 21.516 r_dihedral_angle_4_deg 15.577 r_scangle_it 8.904 r_dihedral_angle_1_deg 8.807 r_scbond_it 6.558 r_mcangle_it 4.182 r_mcbond_it 2.585 r_angle_refined_deg 1.272 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.527 r_dihedral_angle_3_deg 21.516 r_dihedral_angle_4_deg 15.577 r_scangle_it 8.904 r_dihedral_angle_1_deg 8.807 r_scbond_it 6.558 r_mcangle_it 4.182 r_mcbond_it 2.585 r_angle_refined_deg 1.272 r_nbtor_refined 0.296 r_xyhbond_nbd_refined 0.162 r_nbd_refined 0.143 r_symmetry_hbond_refined 0.14 r_chiral_restr 0.121 r_symmetry_vdw_refined 0.102 r_metal_ion_refined 0.031 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5967 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 2
Software Software Software Name Purpose SHELX model building REFMAC refinement MAR345dtb data collection HKL-2000 data reduction HKL-2000 data scaling SHELX phasing