☰ Navigation Tabs
Crystal Structure of Bovine Plasma Copper-Containing Amine Oxidase in Complex with Clonidine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TU5 PDB entry 1TU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.4 293 KH2PO4 (0.2 M, pH 7.4) and PEG 3350 (20%, w/v), VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.09 41.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.36 α = 90 b = 131.956 β = 90 c = 134.159 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 0.97984 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 34 86.8 0.129 3.7 3 47787 47787 44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 82.1 0.407 1.5 3.1 6507
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1TU5 2.4 29.11 47787 45208 2429 86.48 0.2389 0.23774 0.23695 0.2358 0.25227 0.2484 RANDOM 28.622
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 -0.31 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.803 r_dihedral_angle_4_deg 16.823 r_dihedral_angle_3_deg 16.722 r_scangle_it 6.486 r_mcangle_it 5.893 r_scbond_it 4.662 r_dihedral_angle_1_deg 4.661 r_mcbond_it 3.859 r_angle_refined_deg 0.877 r_nbtor_refined 0.334
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.803 r_dihedral_angle_4_deg 16.823 r_dihedral_angle_3_deg 16.722 r_scangle_it 6.486 r_mcangle_it 5.893 r_scbond_it 4.662 r_dihedral_angle_1_deg 4.661 r_mcbond_it 3.859 r_angle_refined_deg 0.877 r_nbtor_refined 0.334 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.204 r_symmetry_hbond_refined 0.2 r_symmetry_vdw_refined 0.177 r_metal_ion_refined 0.13 r_chiral_restr 0.063 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9852 Nucleic Acid Atoms Solvent Atoms 331 Heterogen Atoms 121
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling CNS phasing