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Structural Genomics, the crystal structure of the C-terminal domain of histidine utilization repressor from Pseudomonas syringae pv. tomato str. DC3000
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 100mM HEPES, 200mM Ammonium sulfate, 10% Isopropanol, 16% PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.46 49.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.845 α = 90 b = 100.955 β = 90 c = 130.187 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirror 2007-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97925 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 39.87 99.9 0.095 24.53 5.6 97149 97149 23.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 99.8 0.577 2.83 5.4 6388
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 39.87 91866 91866 4838 99.09 0.22243 0.22243 0.21945 0.2324 0.27728 0.2895 RANDOM 29.137
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.255 r_dihedral_angle_4_deg 18.034 r_dihedral_angle_3_deg 15.793 r_dihedral_angle_1_deg 7.347 r_scangle_it 5.596 r_scbond_it 3.706 r_mcangle_it 2.07 r_angle_refined_deg 2.014 r_mcbond_it 1.459 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.255 r_dihedral_angle_4_deg 18.034 r_dihedral_angle_3_deg 15.793 r_dihedral_angle_1_deg 7.347 r_scangle_it 5.596 r_scbond_it 3.706 r_mcangle_it 2.07 r_angle_refined_deg 2.014 r_mcbond_it 1.459 r_nbtor_refined 0.311 r_symmetry_hbond_refined 0.227 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.199 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.15 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9056 Nucleic Acid Atoms Solvent Atoms 931 Heterogen Atoms 128
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling MLPHARE phasing HKL-3000 phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building