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Crystal structure of Atu1953, protein of unknown function
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 1M Na acetate, 50mM Cd sulfate, 0.21M Hepes pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.91 35.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.847 α = 90 b = 61.485 β = 92.57 c = 54.383 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2006-11-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97921, 0.97941, 0.97154 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.7 0.072 39.27 6.9 16889 16839 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.87 100 0.255 6.64 6.6 444
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 27.17 15972 15972 852 99.43 0.19593 0.19593 0.19361 0.198 0.238 0.2446 RANDOM 26.527
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.58 -0.86 -0.48 -2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.616 r_dihedral_angle_4_deg 23.507 r_dihedral_angle_3_deg 13.123 r_dihedral_angle_1_deg 8.184 r_scangle_it 3.905 r_scbond_it 2.538 r_angle_refined_deg 1.579 r_mcangle_it 1.574 r_mcbond_it 1.251 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.616 r_dihedral_angle_4_deg 23.507 r_dihedral_angle_3_deg 13.123 r_dihedral_angle_1_deg 8.184 r_scangle_it 3.905 r_scbond_it 2.538 r_angle_refined_deg 1.579 r_mcangle_it 1.574 r_mcbond_it 1.251 r_nbtor_refined 0.314 r_symmetry_hbond_refined 0.25 r_symmetry_vdw_refined 0.213 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.112 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1725 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling autoSHARP phasing