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Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 35% (v/v) MPD in 0.1M sodium cacodylate , pH 6.0, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.49 50.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.025 α = 90 b = 146.025 β = 90 c = 93.14 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-11-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.92017, 0.9203, 0.9050 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 100 97.8 0.054 0.054 40.58 15.3 12382 12382
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.9 88.5 0.597 0.388 3.73 12.1 1103
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 100 11034 11034 599 91.8 0.22771 0.22771 0.2238 0.3029 RANDOM 59.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.53 -2.53 5.05
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 16.424 r_scbond_it 13.62 r_mcangle_it 12.619 r_mcbond_it 2.97 r_angle_refined_deg 1.131 r_symmetry_vdw_refined 0.345 r_nbtor_refined 0.342 r_nbd_refined 0.338 r_xyhbond_nbd_refined 0.3 r_symmetry_hbond_refined 0.178
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 16.424 r_scbond_it 13.62 r_mcangle_it 12.619 r_mcbond_it 2.97 r_angle_refined_deg 1.131 r_symmetry_vdw_refined 0.345 r_nbtor_refined 0.342 r_nbd_refined 0.338 r_xyhbond_nbd_refined 0.3 r_symmetry_hbond_refined 0.178 r_chiral_restr 0.053 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 3144 Solvent Atoms Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing