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Urate Oxidase in complex with tris-dipicolinate Lutetium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 5% PEG 8000, 0.1 Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.95 58.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.55 α = 90 b = 95.32 β = 90 c = 104.33 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-03-20 M MAD 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.979700, 1.341332 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.518 47.673 96.6 0.066 0.066 4.7 6.6 59288 18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.6 84.6 0.011 1.084 0.4 3.1 7489
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 15 51652 2605 98.42 0.18 0.179 0.1906 0.195 0.2054 RANDOM 18.887
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 -0.48 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.7 r_dihedral_angle_3_deg 13.297 r_sphericity_free 11.897 r_dihedral_angle_4_deg 8.793 r_dihedral_angle_1_deg 5.93 r_scangle_it 3.936 r_scbond_it 2.733 r_mcbond_it 1.783 r_mcangle_it 1.664 r_angle_refined_deg 1.358
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.7 r_dihedral_angle_3_deg 13.297 r_sphericity_free 11.897 r_dihedral_angle_4_deg 8.793 r_dihedral_angle_1_deg 5.93 r_scangle_it 3.936 r_scbond_it 2.733 r_mcbond_it 1.783 r_mcangle_it 1.664 r_angle_refined_deg 1.358 r_angle_other_deg 0.809 r_mcbond_other 0.213 r_nbd_refined 0.2 r_nbd_other 0.2 r_nbtor_refined 0.181 r_symmetry_vdw_other 0.177 r_xyhbond_nbd_other 0.153 r_xyhbond_nbd_refined 0.152 r_symmetry_hbond_refined 0.14 r_nbtor_other 0.084 r_symmetry_vdw_refined 0.082 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_bond_other_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2360 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 86
Software Software Software Name Purpose SCALA data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction