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Crystal structure of RbcX, crystal form I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.30-1.55 M Sodium acetate, 0.1 M HEPES-NaOH pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.89 74.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.335 α = 90 b = 93.335 β = 90 c = 411.99 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-06-18 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9789 SLS X10SA 2 SYNCHROTRON ESRF BEAMLINE BM14 0.8793 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.8 411.99 100 0.08 0.08 6.5 14.5 46362
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.8 2.95 100 0.641 0.641 1.2 14.8 6617
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.8 20 46068 2321 99.96 0.242 0.24 0.2355 0.262 0.2588 RANDOM 64.684
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.29 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_4_deg 22.845 r_dihedral_angle_3_deg 21.646 r_dihedral_angle_1_deg 5.226 r_scangle_it 3.081 r_scbond_it 1.788 r_angle_refined_deg 1.406 r_mcangle_it 1.279 r_mcbond_it 0.694 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_4_deg 22.845 r_dihedral_angle_3_deg 21.646 r_dihedral_angle_1_deg 5.226 r_scangle_it 3.081 r_scbond_it 1.788 r_angle_refined_deg 1.406 r_mcangle_it 1.279 r_mcbond_it 0.694 r_nbtor_refined 0.312 r_nbd_refined 0.244 r_symmetry_vdw_refined 0.203 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.093 r_symmetry_hbond_refined 0.019 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5086 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction