☰ Navigation Tabs
Crystal Structure of the Major Malassezia sympodialis Allergen Mala s 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 25% PEG 8K, 0.2 M (NH4)2SO4, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 50.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.48 α = 90 b = 164 β = 90 c = 50.68 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 180 mm plate 2006-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 99.5 0.062 10.9 4.4 91792 91336 -3 12.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.35 99.2 0.608 3.5 8976
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.35 44.5 82536 82044 1646 99.41 0.139 0.139 0.1469 0.153 0.161 RANDOM 11.439
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.16 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.737 r_dihedral_angle_4_deg 17.247 r_sphericity_free 14.862 r_dihedral_angle_3_deg 10.696 r_dihedral_angle_1_deg 6.783 r_scangle_it 6.064 r_sphericity_bonded 5.623 r_scbond_it 4.556 r_mcangle_it 4.302 r_angle_other_deg 4.232
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.737 r_dihedral_angle_4_deg 17.247 r_sphericity_free 14.862 r_dihedral_angle_3_deg 10.696 r_dihedral_angle_1_deg 6.783 r_scangle_it 6.064 r_sphericity_bonded 5.623 r_scbond_it 4.556 r_mcangle_it 4.302 r_angle_other_deg 4.232 r_rigid_bond_restr 3.521 r_mcbond_other 3.463 r_mcbond_it 3.395 r_angle_refined_deg 1.576 r_symmetry_vdw_other 0.319 r_symmetry_vdw_refined 0.267 r_nbd_other 0.239 r_symmetry_hbond_refined 0.218 r_nbd_refined 0.208 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.161 r_nbtor_other 0.115 r_chiral_restr 0.101 r_bond_refined_d 0.014 r_gen_planes_other 0.012 r_gen_planes_refined 0.01 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2600 Nucleic Acid Atoms Solvent Atoms 396 Heterogen Atoms 44
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection MLPHARE phasing