2P4O

CRYSTAL STRUCTURE OF A PUTATIVE LACTONASE OF THE SMP-30/GLUCONOLACTONASE/LRE-LIKE REGION FAMILY (NPUN_F0524) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.90 A RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5293NANODROP, 1.7M (NH4)2SO4, 15.0% Glycerol, 1.7% PEG 400, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4148.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.442α = 90
b = 91.442β = 90
c = 75.188γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat mirror (vertical focusing)2007-02-11MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-10.91162, 0.97895, 0.97925SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.929.6961000.0720.07267.125746
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.951000.7520.75217.21865

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.929.69625661130799.970.1740.1740.1720.219RANDOM39.328
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.10.1-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.546
r_dihedral_angle_4_deg22.635
r_dihedral_angle_3_deg12.913
r_dihedral_angle_1_deg7.273
r_scangle_it7.002
r_scbond_it5.492
r_mcangle_it3.061
r_mcbond_it2.15
r_angle_refined_deg1.591
r_angle_other_deg0.866
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.546
r_dihedral_angle_4_deg22.635
r_dihedral_angle_3_deg12.913
r_dihedral_angle_1_deg7.273
r_scangle_it7.002
r_scbond_it5.492
r_mcangle_it3.061
r_mcbond_it2.15
r_angle_refined_deg1.591
r_angle_other_deg0.866
r_symmetry_vdw_refined0.598
r_mcbond_other0.55
r_symmetry_hbond_refined0.314
r_nbd_refined0.211
r_nbd_other0.185
r_nbtor_refined0.172
r_symmetry_vdw_other0.16
r_xyhbond_nbd_refined0.159
r_chiral_restr0.096
r_nbtor_other0.086
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2246
Nucleic Acid Atoms
Solvent Atoms134
Heterogen Atoms10

Software

Software
Software NamePurpose
MolProbitymodel building
SOLVEphasing
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
MAR345data collection
MOSFLMdata reduction
CCP4data scaling