☰ Navigation Tabs
Complex of a camelid single-domain vhh antibody fragment with RNASE A at 2.5A resolution: se5b-ortho-2 crystal form with five se-met sites (L4M, M34, M51, F68M, M83) in vhh scaffold.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 295 HAMPTON RESEARCH INDEX SCREEN, SOLUTION #93: ZN(CH2H3O2)2,
PEG 3350, pH 8.0, VAPOR DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.97 37.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.27 α = 90 b = 70.057 β = 90 c = 123.408 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 MIRRORS 2004-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.97911 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 99.8 3.8 15319 15319
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 20 15319 14539 780 99.81 0.22476 0.22476 0.22062 0.2315 0.29899 0.2991 RANDOM 29.791
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.34 4.22 -1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.774 r_dihedral_angle_3_deg 16.698 r_dihedral_angle_4_deg 15.707 r_dihedral_angle_1_deg 9.372 r_scangle_it 2.65 r_scbond_it 1.854 r_mcangle_it 1.082 r_angle_refined_deg 1.04 r_mcbond_it 1.005 r_angle_other_deg 0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.774 r_dihedral_angle_3_deg 16.698 r_dihedral_angle_4_deg 15.707 r_dihedral_angle_1_deg 9.372 r_scangle_it 2.65 r_scbond_it 1.854 r_mcangle_it 1.082 r_angle_refined_deg 1.04 r_mcbond_it 1.005 r_angle_other_deg 0.74 r_nbd_refined 0.228 r_symmetry_vdw_other 0.22 r_symmetry_vdw_refined 0.212 r_nbd_other 0.202 r_xyhbond_nbd_refined 0.176 r_mcbond_other 0.158 r_metal_ion_refined 0.135 r_symmetry_hbond_refined 0.122 r_nbtor_other 0.089 r_chiral_restr 0.069 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3642 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing