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The crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB entry 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 37% PEG400, 0.1M Tris-HCl, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.125 α = 90 b = 54.686 β = 99.96 c = 66.466 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.9793 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 99.9 0.111 14.01 3.4 57675
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.35 100 0.286 5.36 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2G8C 1.3 20 54499 54499 2900 99.83 0.15709 0.15709 0.15535 0.1567 0.1883 0.1879 RANDOM 11.737
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.07 -0.11 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.458 r_dihedral_angle_3_deg 9.757 r_dihedral_angle_4_deg 8.032 r_dihedral_angle_1_deg 6.176 r_sphericity_free 5.255 r_scangle_it 4.156 r_sphericity_bonded 3.166 r_scbond_it 3.054 r_mcangle_it 2.021 r_mcbond_it 1.645
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.458 r_dihedral_angle_3_deg 9.757 r_dihedral_angle_4_deg 8.032 r_dihedral_angle_1_deg 6.176 r_sphericity_free 5.255 r_scangle_it 4.156 r_sphericity_bonded 3.166 r_scbond_it 3.054 r_mcangle_it 2.021 r_mcbond_it 1.645 r_angle_refined_deg 1.393 r_rigid_bond_restr 1.363 r_angle_other_deg 0.742 r_mcbond_other 0.584 r_nbd_refined 0.207 r_nbd_other 0.182 r_nbtor_refined 0.163 r_symmetry_hbond_refined 0.161 r_symmetry_vdw_refined 0.142 r_xyhbond_nbd_refined 0.133 r_symmetry_vdw_other 0.13 r_chiral_restr 0.086 r_nbtor_other 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1839 Nucleic Acid Atoms Solvent Atoms 445 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing