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The crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB entry 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 26% PEG3350, 0.1M Imidazole, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.53 51.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.046 α = 90 b = 56.005 β = 97.09 c = 66.204 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.0332 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.8 0.084 13.9 3.6 22098
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 100 0.084 3.61 3.4 2185
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2G8C 1.86 20 20929 20929 1127 98.97 0.20764 0.20764 0.20608 0.228 0.23635 0.2603 RANDOM 39.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.53 1.29 -1.3 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.193 r_dihedral_angle_4_deg 21.524 r_dihedral_angle_3_deg 15.832 r_dihedral_angle_1_deg 12.837 r_scangle_it 5.798 r_scbond_it 4.032 r_mcbond_it 2.384 r_mcangle_it 2.276 r_angle_refined_deg 1.971 r_angle_other_deg 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.193 r_dihedral_angle_4_deg 21.524 r_dihedral_angle_3_deg 15.832 r_dihedral_angle_1_deg 12.837 r_scangle_it 5.798 r_scbond_it 4.032 r_mcbond_it 2.384 r_mcangle_it 2.276 r_angle_refined_deg 1.971 r_angle_other_deg 0.89 r_mcbond_other 0.393 r_symmetry_vdw_other 0.287 r_symmetry_vdw_refined 0.281 r_symmetry_hbond_refined 0.242 r_nbd_refined 0.22 r_nbd_other 0.204 r_nbtor_refined 0.165 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.126 r_nbtor_other 0.087 r_bond_refined_d 0.023 r_gen_planes_refined 0.009 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1814 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing