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N-terminal fragment of Streptococcus pyogenes M1 protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.1 277 32% MPD, 0.3M ammonium acetate, 0.1M sodium citrate, pH 6.1, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.2 61.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.374 α = 90 b = 83.405 β = 90 c = 93.467 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-06-10 M MAD 2 1 x-ray 100 CCD ADSC QUANTUM 315 2004-11-13 M SINGLE WAVELENGTH 3 1 4 1 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.97929,0.97945,0.95666,1.008 ALS 5.0.2 2 SYNCHROTRON APS BEAMLINE 19-ID 0.97934 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3.03 50 99.4 0.076 7.9 5.7 18650 18530 -3 72.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 3.03 3.14 98.5 0.376 5.1 1796
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.04 40.76 18530 18433 963 99.34 0.337 0.337 0.337 0.3365 0.338 0.3393 RANDOM 92.554
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 15.26 -15.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.38 r_mcangle_it 28.202 r_dihedral_angle_3_deg 21.987 r_mcbond_it 20.793 r_dihedral_angle_4_deg 18.82 r_dihedral_angle_1_deg 6.864 r_scangle_it 2.367 r_scbond_it 2.317 r_angle_refined_deg 1.361 r_symmetry_hbond_refined 0.558
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.38 r_mcangle_it 28.202 r_dihedral_angle_3_deg 21.987 r_mcbond_it 20.793 r_dihedral_angle_4_deg 18.82 r_dihedral_angle_1_deg 6.864 r_scangle_it 2.367 r_scbond_it 2.317 r_angle_refined_deg 1.361 r_symmetry_hbond_refined 0.558 r_symmetry_vdw_refined 0.477 r_nbd_refined 0.324 r_nbtor_refined 0.317 r_xyhbond_nbd_refined 0.227 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4521 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling