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Crystal structure of YaeQ protein from Pseudomonas syringae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 298 0.5M K/Na Tartrate, 0.2M LiSO4, 10% PEG3350, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.32 46.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.311 α = 90 b = 61.405 β = 90 c = 77.828 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97980 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 50 99.9 0.077 43.8 8.9 14451 14144 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.03 99.2 0.284 6.4 6.8 1421
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.97 48.22 13493 13493 713 99.85 0.18034 0.18034 0.1776 0.1796 0.23911 0.2439 RANDOM 28.673
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 0.16 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.744 r_dihedral_angle_3_deg 14.227 r_dihedral_angle_4_deg 13.631 r_dihedral_angle_1_deg 5.77 r_scangle_it 3.192 r_scbond_it 1.953 r_angle_refined_deg 1.27 r_mcangle_it 1.259 r_mcbond_it 0.67 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.744 r_dihedral_angle_3_deg 14.227 r_dihedral_angle_4_deg 13.631 r_dihedral_angle_1_deg 5.77 r_scangle_it 3.192 r_scbond_it 1.953 r_angle_refined_deg 1.27 r_mcangle_it 1.259 r_mcbond_it 0.67 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.184 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.092 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1454 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing