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Crystal structure of the Neisseria meningitidis minor Type IV pilin, PilX, in space group P43
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 22% PEG 8K, 120 mM LiSO4, 100 mM Bis Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.29 46.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.836 α = 90 b = 76.836 β = 90 c = 89.663 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 CCD BRUKER PROTEUM Montel 200 2005-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 25 98.6 0.072 9.7 6.4 20280
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 87.2 0.243 3.1 1794
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Combination of SAD and Mol. Replacement THROUGHOUT 2.4 25 19111 1033 98.61 0.21156 0.20794 0.2736 0.27893 0.3256 RANDOM 47.078
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.05 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.091 r_dihedral_angle_4_deg 16.753 r_dihedral_angle_3_deg 15.934 r_dihedral_angle_1_deg 6.603 r_scangle_it 1.634 r_mcangle_it 1.598 r_angle_refined_deg 1.486 r_scbond_it 1.159 r_mcbond_it 1.027 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.091 r_dihedral_angle_4_deg 16.753 r_dihedral_angle_3_deg 15.934 r_dihedral_angle_1_deg 6.603 r_scangle_it 1.634 r_mcangle_it 1.598 r_angle_refined_deg 1.486 r_scbond_it 1.159 r_mcbond_it 1.027 r_nbtor_refined 0.319 r_symmetry_vdw_refined 0.265 r_nbd_refined 0.233 r_xyhbond_nbd_refined 0.228 r_symmetry_hbond_refined 0.189 r_chiral_restr 0.111 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3622 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction PROTEUM PLUS data collection HKL-2000 data reduction SOLVE phasing RESOLVE phasing