2OPC | pdb_00002opc

Structure of Melampsora lini avirulence protein, AvrL567-A

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8	290.05	10% PEG 8000, 0.1 M imidazole, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290.05K
2	VAPOR DIFFUSION, HANGING DROP	7.5	290.05	4-10% PEG 8000, 0.1 M imidazole, 12.5-17.5 mM CoCl2, pH 7.5-8.5, VAPOR DIFFUSION, HANGING DROP, temperature 290.05K

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 39.818	α = 90
b = 52.379	β = 90
c = 70.827	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	RIGAKU RAXIS IV		2005-04-22	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.43	50	93.3	0.056	33.7			28149			32.137

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.432	1.468			0.238	13.95

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	1.43	26.46	26436	1393	99.1	0.19825	0.19689	0.2639	0.22593	0.2963	RANDOM	32.137

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.15			-0.03		-0.12

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.733
r_dihedral_angle_4_deg	15.062
r_dihedral_angle_3_deg	11.603
r_dihedral_angle_1_deg	6.716
r_scangle_it	3.592
r_scbond_it	2.418
r_mcangle_it	1.932
r_angle_refined_deg	1.617
r_mcbond_it	1.16
r_nbtor_refined	0.31
r_nbd_refined	0.228
r_symmetry_vdw_refined	0.22
r_symmetry_hbond_refined	0.162
r_xyhbond_nbd_refined	0.136
r_chiral_restr	0.111
r_bond_refined_d	0.015
r_gen_planes_refined	0.009

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	929
Nucleic Acid Atoms
Solvent Atoms	190
Heterogen Atoms	6

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing