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The crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB entry 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 20% PEG3350, 6% isopropanol, 200mM NaCl, and 100 mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.41 49.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.127 α = 85.68 b = 55.333 β = 74.05 c = 64.789 γ = 86.45
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-12-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 50 95.6 0.069 18.87 3.4 103051
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.35 1.4 93.1 0.324 4.34 3.4 10015
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2G8C 1.35 20 97870 97870 5139 95.22 0.1854 0.1854 0.18367 0.2089 0.21819 0.2385 RANDOM 15.287
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 0.22 -0.18 -0.31 -0.2 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.637 r_dihedral_angle_4_deg 20.9 r_dihedral_angle_3_deg 11.997 r_sphericity_free 7.202 r_dihedral_angle_1_deg 7.118 r_scangle_it 4.414 r_scbond_it 3.469 r_sphericity_bonded 2.475 r_mcangle_it 2.168 r_rigid_bond_restr 2.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.637 r_dihedral_angle_4_deg 20.9 r_dihedral_angle_3_deg 11.997 r_sphericity_free 7.202 r_dihedral_angle_1_deg 7.118 r_scangle_it 4.414 r_scbond_it 3.469 r_sphericity_bonded 2.475 r_mcangle_it 2.168 r_rigid_bond_restr 2.142 r_mcbond_it 2.043 r_angle_refined_deg 1.479 r_angle_other_deg 0.749 r_mcbond_other 0.678 r_symmetry_vdw_other 0.245 r_nbd_refined 0.227 r_symmetry_vdw_refined 0.227 r_nbd_other 0.2 r_symmetry_hbond_refined 0.176 r_nbtor_refined 0.159 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.09 r_nbtor_other 0.083 r_bond_refined_d 0.013 r_bond_other_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3767 Nucleic Acid Atoms Solvent Atoms 568 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing