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Crystal structure of human PIM1 in complex with fluorinated ruthenium pyridocarbazole
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 100mM BIS-TRIS PROPANE, 0.2M MgCl2, 20% PEG 3350, 10% ETHILENE GLYCOL, 0.3% DMSO, SITTING DROP, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.14 60.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.104 α = 90 b = 98.104 β = 90 c = 80.672 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 128 IMAGE PLATE RIGAKU RAXIS IV 2006-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 26.72 93.1 0.104 6.2 2.73 20939 20939 1.7 1.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 96.4 0.45 1.7 2.59
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.2 18.54 1 1 19812 19812 1087 93.06 0.19199 0.19199 0.18906 0.1958 0.24433 0.2502 RANDOM 30.624
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.523 r_dihedral_angle_4_deg 17.69 r_dihedral_angle_3_deg 16.434 r_dihedral_angle_1_deg 7.924 r_scangle_it 4.619 r_scbond_it 3.204 r_mcangle_it 2.164 r_angle_refined_deg 1.893 r_mcbond_it 1.43 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.523 r_dihedral_angle_4_deg 17.69 r_dihedral_angle_3_deg 16.434 r_dihedral_angle_1_deg 7.924 r_scangle_it 4.619 r_scbond_it 3.204 r_mcangle_it 2.164 r_angle_refined_deg 1.893 r_mcbond_it 1.43 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.295 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.191 r_symmetry_hbond_refined 0.156 r_chiral_restr 0.132 r_bond_refined_d 0.019 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2253 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection CrystalClear data reduction CrystalClear data scaling CNS phasing