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ppm1 in the absence of 1,8-ANS (cf 1JD)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RJD PDB ENTRY 1RJD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 300 15% PEG 8000, 0.2M ammonium sulfate, 0.1M MES, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.53 51.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.62 α = 90 b = 110.62 β = 90 c = 161.94 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.81 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.917 33.059 99.72 85781 85540 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.967 96.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1RJD 1.92 33.06 85780 85540 4276 99.72 0.209 0.206 0.2066 0.268 0.2693 RANDOM 16.465
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.02 0.03 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.109 r_dihedral_angle_4_deg 16.75 r_dihedral_angle_3_deg 16.125 r_dihedral_angle_1_deg 6.504 r_scangle_it 3.362 r_scbond_it 2.292 r_angle_refined_deg 1.875 r_mcangle_it 1.37 r_mcbond_it 0.936 r_symmetry_hbond_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.109 r_dihedral_angle_4_deg 16.75 r_dihedral_angle_3_deg 16.125 r_dihedral_angle_1_deg 6.504 r_scangle_it 3.362 r_scbond_it 2.292 r_angle_refined_deg 1.875 r_mcangle_it 1.37 r_mcbond_it 0.936 r_symmetry_hbond_refined 0.319 r_nbtor_refined 0.308 r_nbd_refined 0.227 r_symmetry_vdw_refined 0.209 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7908 Nucleic Acid Atoms Solvent Atoms 624 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling AMoRE phasing