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WDR5 in Complex with Dimethylated H3K4 Peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 300 20% PEG 5000 MME, 0.1M BIS-TRIS, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.2 44.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.045 α = 90 b = 46.975 β = 117.26 c = 112.236 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU 2006-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 100 96.4 47729
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 100 45288 2429 96.2 0.177 0.174 0.1732 0.226 0.2234 RANDOM 21.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.22 -0.35 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.44 r_dihedral_angle_4_deg 20.209 r_dihedral_angle_3_deg 14.267 r_dihedral_angle_1_deg 7.483 r_scangle_it 2.634 r_scbond_it 1.796 r_angle_refined_deg 1.352 r_mcangle_it 1.112 r_mcbond_it 0.694 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.44 r_dihedral_angle_4_deg 20.209 r_dihedral_angle_3_deg 14.267 r_dihedral_angle_1_deg 7.483 r_scangle_it 2.634 r_scbond_it 1.796 r_angle_refined_deg 1.352 r_mcangle_it 1.112 r_mcbond_it 0.694 r_nbtor_refined 0.295 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.172 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.09 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4817 Nucleic Acid Atoms Solvent Atoms 615 Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing REFMAC refinement CrystalClear data reduction DENZO data reduction SCALEPACK data scaling