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CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 9 277 2.0% Dioxane, 10.0% PEG-20000, 0.1M Bicine pH 9.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 2 VAPOR DIFFUSION, SITTING DROP, NANODROP 6.6 277 0.2M (NH4)2Tartrate, 20.0% PEG-3350, No Buffer pH 6.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.255 α = 90 b = 102.255 β = 90 c = 74.746 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 1m long Rh coated bent cylindrical mirror forhorizontal and vertical focussing 2006-11-17 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2006-10-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 SSRL BL1-5 2 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97921, 0.97888, 0.94645 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.55 29.683 100 0.067 0.067 7.5 9.1 57924 21.35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.55 1.59 99.7 0.965 0.965 0.8 7 4157
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.55 29.683 57868 2939 99.95 0.171 0.17 0.191 0.2275 RANDOM 20.305
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.541 r_dihedral_angle_4_deg 19.63 r_dihedral_angle_3_deg 12.652 r_dihedral_angle_1_deg 9.118 r_scangle_it 6.464 r_scbond_it 4.504 r_mcangle_it 3.183 r_mcbond_it 2.062 r_angle_refined_deg 1.837 r_angle_other_deg 1.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.541 r_dihedral_angle_4_deg 19.63 r_dihedral_angle_3_deg 12.652 r_dihedral_angle_1_deg 9.118 r_scangle_it 6.464 r_scbond_it 4.504 r_mcangle_it 3.183 r_mcbond_it 2.062 r_angle_refined_deg 1.837 r_angle_other_deg 1.006 r_mcbond_other 0.516 r_symmetry_vdw_other 0.373 r_symmetry_vdw_refined 0.28 r_symmetry_hbond_refined 0.24 r_nbd_other 0.209 r_nbd_refined 0.202 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.183 r_chiral_restr 0.114 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1900 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 34
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing SOLVE phasing