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Structure of OHCU decarboxylase from zebrafish
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 277 20 % (v/v) EtOH, 100mM TrisHCl, pH 8.5, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.48 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.815 α = 90 b = 101.815 β = 90 c = 103.915 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-07-06 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2006-09-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.07225 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID29 0.97878, 0.97891, 0.97604 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.8 103.69 99.9 0.072 17.4 5.1 111211 111211
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.8 1.9 100 0.409 2.8 4.9 16284
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 67 105633 105633 5572 99.56 0.19777 0.19777 0.19553 0.1943 0.24022 0.2379 RANDOM 22.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.15 0.31 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.57 r_dihedral_angle_4_deg 19.236 r_dihedral_angle_3_deg 14.316 r_dihedral_angle_1_deg 4.742 r_scangle_it 2.078 r_mcangle_it 1.738 r_scbond_it 1.35 r_angle_refined_deg 1.167 r_mcbond_it 1.142 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.57 r_dihedral_angle_4_deg 19.236 r_dihedral_angle_3_deg 14.316 r_dihedral_angle_1_deg 4.742 r_scangle_it 2.078 r_mcangle_it 1.738 r_scbond_it 1.35 r_angle_refined_deg 1.167 r_mcbond_it 1.142 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.301 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.211 r_symmetry_vdw_refined 0.193 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7895 Nucleic Acid Atoms Solvent Atoms 1224 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction CCP4 data scaling SHARP phasing