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Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YSE PDB entry 1YSE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 20% PEG 20000, 0.05M TrisHCl, 0.01M magnesium chloride, 20% ethylene glycol, pH 8.00, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 50.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.659 α = 71.6 b = 36.997 β = 83.92 c = 41.248 γ = 71.07
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD BRUKER SMART 6000 2006-01-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.64 89.8 0.053 21.6 3.7 9632 25.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 55.2 0.155 3.9 1.9 1571
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1YSE 2 19.57 2 2 10638 9613 993 90.3 0.212 0.212 0.216 0.255 RANDOM 24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.81 6.73 1.35 -5.87 2.28 -1.94
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 17 c_scangle_it 2.89 c_scbond_it 1.96 c_mcangle_it 1.85 c_mcbond_it 1.21 c_improper_angle_d 1.17 c_angle_deg 1.08 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 17 c_scangle_it 2.89 c_scbond_it 1.96 c_mcangle_it 1.85 c_mcbond_it 1.21 c_improper_angle_d 1.17 c_angle_deg 1.08 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 696 Nucleic Acid Atoms 486 Solvent Atoms 75 Heterogen Atoms
Software Software Software Name Purpose SMART data collection CNS refinement SAINT data reduction SCALA data scaling CNS phasing