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Structure of full length GRP94 with AMP-PNP bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other homology models
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 291 26-32% v/v PEG400, 150-225mM MgCl2, and 0.1M Bis-tris propane, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.64 53.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.33 α = 90 b = 109.26 β = 90 c = 148.887 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 1.00000 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.23 47.89 99.6 0.082 22.6 12.4 79681 79363 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.23 2.35 98.1 0.504 3.1 8.3 10829
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT GRP94(73-754d41) 2.4 47.89 79681 60745 3196 99.87 0.24537 0.24308 0.2375 0.28888 0.2837 RANDOM 35.687
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.67 -0.34 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.613 r_dihedral_angle_4_deg 13.44 r_dihedral_angle_3_deg 10.332 r_dihedral_angle_1_deg 2.506 r_scangle_it 1.509 r_angle_refined_deg 1.335 r_scbond_it 0.957 r_mcangle_it 0.86 r_mcbond_it 0.484 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.613 r_dihedral_angle_4_deg 13.44 r_dihedral_angle_3_deg 10.332 r_dihedral_angle_1_deg 2.506 r_scangle_it 1.509 r_angle_refined_deg 1.335 r_scbond_it 0.957 r_mcangle_it 0.86 r_mcbond_it 0.484 r_nbtor_refined 0.309 r_metal_ion_refined 0.201 r_xyhbond_nbd_refined 0.179 r_nbd_refined 0.171 r_symmetry_hbond_refined 0.164 r_symmetry_vdw_refined 0.15 r_chiral_restr 0.091 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9241 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement ADSC data collection XDS data reduction SCALA data scaling PHASER phasing