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The Crystal Structure of athe Putative TetR-family transcriptional regulator Rha06780 from Rhodococcus sp. Rha1.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 298 0.2M Ammonium Formate, 26% PEG3350, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.48 50.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.439 α = 90 b = 114.826 β = 110.08 c = 73.519 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9798 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 69.01 96.6 0.09 17.46 4 88630 85617 2 2 19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.742 79.15 0.392 1.2 2 6412
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 50 85617 4513 96.6 0.18691 0.18526 0.1895 0.21831 0.22 RANDOM 18.284
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.97 0.25 -0.75 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.845 r_dihedral_angle_4_deg 14.973 r_dihedral_angle_3_deg 13.286 r_dihedral_angle_1_deg 4.425 r_scangle_it 3.804 r_scbond_it 2.427 r_mcangle_it 1.206 r_angle_refined_deg 1.123 r_mcbond_it 0.738 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.845 r_dihedral_angle_4_deg 14.973 r_dihedral_angle_3_deg 13.286 r_dihedral_angle_1_deg 4.425 r_scangle_it 3.804 r_scbond_it 2.427 r_mcangle_it 1.206 r_angle_refined_deg 1.123 r_mcbond_it 0.738 r_nbtor_refined 0.294 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.19 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.152 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5976 Nucleic Acid Atoms Solvent Atoms 611 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building