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Receiver domain from Myxococcus xanthus social motility protein FrzS (H92F mutant)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GKG pdb entry 2gkg
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 100mM Bis-Tris pH 5.5, 25% PEG 3350, 20% MPD added before freezing, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.94 36.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.883 α = 90 b = 37.119 β = 102.49 c = 42.104 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.02 20 96.7 0.043 0.043 14.3 3.5 51807 51807 6.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.02 1.08 82.4 0.327 0.327 2 2.2 6553
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2gkg 1.02 20 51778 51778 2625 96.62 0.1241 0.1241 0.12253 0.1345 0.1539 0.1607 RANDOM 8.627
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.37 -0.05 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.996 r_dihedral_angle_4_deg 14.626 r_dihedral_angle_3_deg 10.535 r_dihedral_angle_1_deg 6.489 r_sphericity_free 5.938 r_scangle_it 4.325 r_scbond_it 3.156 r_sphericity_bonded 2.697 r_mcangle_it 2.017 r_mcbond_it 1.654
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.996 r_dihedral_angle_4_deg 14.626 r_dihedral_angle_3_deg 10.535 r_dihedral_angle_1_deg 6.489 r_sphericity_free 5.938 r_scangle_it 4.325 r_scbond_it 3.156 r_sphericity_bonded 2.697 r_mcangle_it 2.017 r_mcbond_it 1.654 r_angle_refined_deg 1.539 r_rigid_bond_restr 1.457 r_angle_other_deg 0.849 r_mcbond_other 0.524 r_symmetry_vdw_other 0.311 r_nbd_refined 0.239 r_symmetry_vdw_refined 0.225 r_symmetry_hbond_refined 0.218 r_nbd_other 0.186 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_other 0.152 r_chiral_restr 0.096 r_nbtor_other 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 958 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing