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Crystal structure of protein RHA04536 from Rhodococcus sp
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 PEG3350 25% , Bis-Tris 0.1M pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.39 48.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.683 α = 90 b = 53.165 β = 90 c = 90.062 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2006-06-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97907, 0.97921 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 96.8 0.05 33.36 6.5 6163 6142 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 77 0.11 11.5 5.8 479
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.005 45.04 5862 5862 279 96.59 0.19016 0.19016 0.18878 0.1915 0.2159 0.2225 RANDOM 21.636
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1 2.76 -1.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.694 r_dihedral_angle_3_deg 13.536 r_dihedral_angle_4_deg 13.3 r_dihedral_angle_1_deg 6.655 r_scangle_it 4.778 r_scbond_it 2.933 r_angle_refined_deg 1.682 r_mcangle_it 1.394 r_mcbond_it 0.99 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.694 r_dihedral_angle_3_deg 13.536 r_dihedral_angle_4_deg 13.3 r_dihedral_angle_1_deg 6.655 r_scangle_it 4.778 r_scbond_it 2.933 r_angle_refined_deg 1.682 r_mcangle_it 1.394 r_mcbond_it 0.99 r_nbtor_refined 0.292 r_symmetry_vdw_refined 0.29 r_nbd_refined 0.242 r_symmetry_hbond_refined 0.189 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.11 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 651 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing