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Crystal structure of the C-terminal RNAseH endonuclase domain of UvrC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 295 2.4 M sodium chloride, 0.1 M sodium acetate (pH 4.6) and 0.1 M lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2 38.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.048 α = 90 b = 46.516 β = 90 c = 84.501 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-10-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.0, 1.07249, 1.07114 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 40 99.6 0.067 13.1 47662 47662 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.24 99.2 0.417 4650
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.2 40 45214 47626 2412 99.81 0.184 0.184 0.183 0.218 0.2492 RANDOM 19.909
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 1.57 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.08 r_dihedral_angle_4_deg 21.089 r_dihedral_angle_3_deg 13.338 r_dihedral_angle_1_deg 5.745 r_scangle_it 5.626 r_scbond_it 4.318 r_mcangle_it 3.008 r_mcbond_it 2.562 r_mcbond_other 1.939 r_angle_refined_deg 1.585
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.08 r_dihedral_angle_4_deg 21.089 r_dihedral_angle_3_deg 13.338 r_dihedral_angle_1_deg 5.745 r_scangle_it 5.626 r_scbond_it 4.318 r_mcangle_it 3.008 r_mcbond_it 2.562 r_mcbond_other 1.939 r_angle_refined_deg 1.585 r_angle_other_deg 0.871 r_symmetry_vdw_other 0.332 r_xyhbond_nbd_refined 0.269 r_symmetry_hbond_refined 0.265 r_symmetry_vdw_refined 0.249 r_nbd_refined 0.23 r_nbd_other 0.206 r_nbtor_refined 0.187 r_chiral_restr 0.11 r_nbtor_other 0.088 r_xyhbond_nbd_other 0.055 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1125 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction