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Crystal structure of putative transferase from Campylobacter jejuni subsp. jejuni NCTC 11168
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 2.6M (NH4)2SO4, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.17 61.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.141 α = 90 b = 87.141 β = 90 c = 65.118 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9795 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99 0.068 0.075 22.5 5.5 14360 14347 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 100 0.21 0.2 9.7 5.4 1439
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 50 1 1 14383 13621 720 99.76 0.20843 0.2084 0.20618 0.199 0.2513 0.2426 RANDOM 36.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -0.16 -0.31 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.547 r_dihedral_angle_1_deg 28.248 r_dihedral_angle_4_deg 22.308 r_dihedral_angle_3_deg 18.321 r_scangle_it 2.933 r_angle_refined_deg 2.776 r_scbond_it 1.86 r_mcangle_it 1.241 r_mcbond_it 0.701 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.547 r_dihedral_angle_1_deg 28.248 r_dihedral_angle_4_deg 22.308 r_dihedral_angle_3_deg 18.321 r_scangle_it 2.933 r_angle_refined_deg 2.776 r_scbond_it 1.86 r_mcangle_it 1.241 r_mcbond_it 0.701 r_nbtor_refined 0.317 r_symmetry_vdw_refined 0.312 r_nbd_refined 0.244 r_chiral_restr 0.239 r_symmetry_hbond_refined 0.229 r_xyhbond_nbd_refined 0.206 r_bond_refined_d 0.016 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1460 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling SHARP phasing