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Crystal structure of TetR-family regulator (SCO0857) from Streptomyces coelicolor A3.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.4 293 0.1M Hampton pH 4.4, 0.05M K Thiocyanate, 25% PEG2KMME, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.28 45.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.431 α = 90 b = 92.768 β = 90 c = 93.938 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9771 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 41.59 16794 16794
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 97.7 0.38 0.325 3.5 6.3 1704
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.35 41.59 16794 16794 917 100 0.22462 0.22237 0.2393 0.26428 0.2801 RANDOM 51.287
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.1 0.27 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.548 r_dihedral_angle_4_deg 21.397 r_dihedral_angle_3_deg 17.34 r_dihedral_angle_1_deg 6.417 r_scangle_it 5.021 r_scbond_it 3.528 r_angle_refined_deg 1.802 r_mcbond_it 1.735 r_mcangle_it 1.687 r_symmetry_vdw_refined 0.341
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.548 r_dihedral_angle_4_deg 21.397 r_dihedral_angle_3_deg 17.34 r_dihedral_angle_1_deg 6.417 r_scangle_it 5.021 r_scbond_it 3.528 r_angle_refined_deg 1.802 r_mcbond_it 1.735 r_mcangle_it 1.687 r_symmetry_vdw_refined 0.341 r_nbtor_refined 0.297 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.121 r_symmetry_hbond_refined 0.085 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2339 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing O model building Coot model building CCP4 phasing ARP/wARP model building