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Crystal Structure of an RNA domain from Hepatitis C virus.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 20mM MgSO4, 100mM KCl, 30mM MnCl2, 2-6% MPD over 40mM MgSO4, 200mM KCl and 40-50% MPD., pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.34 63.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.098 α = 90 b = 65.351 β = 90 c = 92.4 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2006-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 20 7158 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 20 7156 347 94.83 0.25932 0.25722 0.2626 0.30167 0.3101 RANDOM 79.332
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.35 4.21 -9.56
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 2.833 r_scangle_it 2.138 r_scbond_it 1.265 r_symmetry_hbond_refined 0.347 r_nbtor_refined 0.298 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.231 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.138 r_bond_refined_d 0.021
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 2.833 r_scangle_it 2.138 r_scbond_it 1.265 r_symmetry_hbond_refined 0.347 r_nbtor_refined 0.298 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.231 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.138 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 1856 Solvent Atoms Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing