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Crystal structure of Ehp / C3d complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GOX PDB entry 2GOX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 293 0.2M LiSO4, 25% PEG 3350, 0.1M Tris-HCl pH 8.2, additive: CaCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.894 α = 90 b = 91.025 β = 89.93 c = 122.595 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MARMOSAIC 300 mm CCD MIRRORS 2006-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.91840 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.699 50 80.8 0.189 2.5 33242
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2GOX 2.7 50 31582 1655 80.6 0.29 0.291 0.291 0.284 0.2897 RANDOM 48.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 -0.33 -2.81 1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.747 r_dihedral_angle_4_deg 15.481 r_dihedral_angle_3_deg 13.184 r_scangle_it 3.481 r_mcangle_it 3.196 r_scbond_it 2.293 r_mcbond_it 1.88 r_angle_refined_deg 1.337 r_dihedral_angle_1_deg 1.112 r_nbtor_refined 0.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.747 r_dihedral_angle_4_deg 15.481 r_dihedral_angle_3_deg 13.184 r_scangle_it 3.481 r_mcangle_it 3.196 r_scbond_it 2.293 r_mcbond_it 1.88 r_angle_refined_deg 1.337 r_dihedral_angle_1_deg 1.112 r_nbtor_refined 0.332 r_nbd_refined 0.295 r_symmetry_vdw_refined 0.287 r_symmetry_hbond_refined 0.23 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.094 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9697 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction HKL-2000 data scaling MOLREP phasing