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C4S dCK variant of dCK in complex with FTC+ADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P5Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 Reservoir containing 0.95-1.5M trisodium citrate dihydrate and 100mM HEPES, pH 7.5., VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.25 45.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.79 α = 90 b = 134.33 β = 90 c = 154.98 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2005-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.3 0.087 16.7 10.1 43903 43616 -3 28.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 96.4 0.569 3.8 9.5 6730
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1P5Z 1.9 30 38983 4313 99.01 0.19168 0.18682 0.1863 0.23452 0.2329 RANDOM 31.416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.29 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.066 r_dihedral_angle_4_deg 18.813 r_dihedral_angle_3_deg 16.012 r_dihedral_angle_1_deg 5.963 r_scangle_it 3.644 r_scbond_it 2.499 r_mcangle_it 1.814 r_angle_refined_deg 1.723 r_mcbond_it 1.114 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.066 r_dihedral_angle_4_deg 18.813 r_dihedral_angle_3_deg 16.012 r_dihedral_angle_1_deg 5.963 r_scangle_it 3.644 r_scbond_it 2.499 r_mcangle_it 1.814 r_angle_refined_deg 1.723 r_mcbond_it 1.114 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.252 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.115 r_symmetry_hbond_refined 0.103 r_bond_refined_d 0.017 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3840 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing