2NCG
The CC domain structure from the wheat stem rust resistance protein Sr33 challenges paradigms for dimerization in plant NLR proteins
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 | |
2 | 3D CBCA(CO)NH | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 | |
3 | 3D HNCACB | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 | |
4 | 3D HNCO | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 | |
5 | 3D HCACO | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 | |
6 | 3D HCCH-COSY | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 | |
8 | 3D 1H-13C NOESY aliphatic | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 | |
9 | 3D 1H-13C NOESY aromatic | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 | |
10 | 3D HBHA(CO)NH | 450 uM [U-100% 13C; U-100% 15N] protein, 10 mM HEPES | 90% H2O/10% D2O | 0 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
2 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | automated NOE assignment | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
3 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
4 | geometry optimization | TALOS | TALOS+ | Cornilescu, Delaglio and Bax |
5 | peak picking | CCPNMR | 2.4.1 | Vranken WF et al. |
6 | data analysis | CCPNMR | 2.4.1 | Vranken WF et al. |
7 | processing | Rowland_NMR_toolkit | 3 | JC Hoch et al. |