2NCE

Solution Structure of Ca2+-bound C2 domain from Protein Kinase C alpha in the form of complex with V5-pHM peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
23D HNCO2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
33D HN(CA)CO2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
43D HNCACB2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
52D 1H-13C HSQC aliphatic2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
63D C(CO)NH2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
73D H(CCO)NH2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
83D HCCH-TOCSY2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
93D HCCH-COSY2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
103D 1H-15N TOCSY2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
112D 1H-13C HSQC aromatic2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
123D HCCH-TOCSY aromatic2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
133D 1H-15N NOESY2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
143D 1H-13C NOESY2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
153D HNHA2.225 mM CALCIUM ION, 0.89 mM [U-13C; U-15N] C2, 6.7 mM MES, 67 mM potassium chloride, 0.02 % sodium azide, 2 mM pHM peptide92% H2O/8% D2O0.0766.0ambient296.15
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE800
3BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number400
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementARIALinge, O'Donoghue and Nilges
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3collectionTopSpinBruker Biospin
4data analysisSparkyGoddard
5refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
6structural validationPSVSBhattacharya and Montelione
7data analysisCcpNMRCCPN