☰ Navigation Tabs
Solution structure of the delta-J-delta-K domain of EMCV IRES
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.5 mM RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride 100% D2O 20 6.5 ambient 308 2 2D 1H-1H NOESY 0.5 mM [U-2H, {H1',H2',H2,H8}-Ade] RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride 100% D2O 20 6.5 ambient 308 3 2D 1H-1H NOESY 0.5 mM [U-2H]-Cyt, [U-2H]-Ura RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride 100% D2O 20 6.5 ambient 308 4 2D 1H-1H NOESY 0.5 mM [U-2H]-Gua, [U-2H]-Ura RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride 100% D2O 20 6.5 ambient 308 5 2D 1H-1H NOESY 0.5 mM RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride 90% H2O/10% D2O 20 6.5 ambient 283 6 2D 1H-1H NOESY 0.5 mM RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride 90% H2O/10% D2O 20 5.5 ambient 283 7 2D 1H-1H NOESY 0.5 mM [U-2H, {H1',H2',H2,H8}-Ade] RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride 90% H2O/10% D2O 20 6.5 ambient 283 8 2D 1H-1H NOESY 0.5 mM [U-2H, {H1',H2',H2,H8}-Ade] RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride 90% H2O/10% D2O 20 5.5 ambient 283
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 700
NMR Refinement Method Details Software simulated annealing CARA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 1000 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CARA Keller and Wuthrich 2 structure solution CYANA Guntert, Mumenthaler and Wuthrich 3 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore