☰ Navigation Tabs
Structure of calcium-bound form of Penicillium antifungal protein (PAF)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion 95% H2O/5% D2O 0.02 5.8 ambient 298 2 2D 1H-13C HSQC 1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion 95% H2O/5% D2O 0.02 5.8 ambient 298 3 2D 1H-1H NOESY 1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion 95% H2O/5% D2O 0.02 5.8 ambient 298 4 3D 1H-15N NOESY 1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion 95% H2O/5% D2O 0.02 5.8 ambient 298 5 3D 1H-15N TOCSY 1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion 95% H2O/5% D2O 0.02 5.8 ambient 298 6 2D 1H-15N HSQC 1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion 95% H2O/5% D2O 0.02 5.8 ambient 298 7 2D 1H-1H NOESY 1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion 95% H2O/5% D2O 0.02 5.8 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker DRX 700
NMR Refinement Method Details Software simulated annealing, torsion angle dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 2.1 Bruker Biospin 2 processing TopSpin 2.1 Bruker Biospin 3 structure solution CYANA 2.1 Guntert, Braun and Wuthrich 4 chemical shift assignment ATNOS-CANDID Herrmann, Guntert and Wuthrich 5 peak picking ATNOS-CANDID Herrmann, Guntert and Wuthrich 6 structure solution ATNOS-CANDID Herrmann, Guntert and Wuthrich 7 chemical shift assignment CCPN_Analysis 2.4 CCPN 8 refinement CYANA