2N9Q
Photoswitchable G-quadruplex
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-13C HSQC | 550 uM DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), 25 mM Tris-HCl, 50 mM KCl | 100% D2O | 71 | 7.4 | ambient | 298 | |
2 | 2D 1H-13C HMBC | 550 uM DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), 25 mM Tris-HCl, 50 mM KCl | 90% H2O/10% D2O | 71 | 7.4 | ambient | 298 | |
3 | 2D 1H-31P TOCSY | 550 uM DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), 25 mM Tris-HCl, 50 mM KCl | 100% D2O | 71 | 7.4 | ambient | 298 | |
4 | 2D 1H-1H P.E. COSY | 550 uM DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), 25 mM Tris-HCl, 50 mM KCl | 100% D2O | 71 | 7.4 | ambient | 298 | |
5 | 2D 1H-1H NOESY | 550 uM DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), 25 mM Tris-HCl, 50 mM KCl | 90% H2O/10% D2O | 71 | 7.4 | ambient | 298 | |
6 | 2D 1H-1H NOESY | 550 uM DNA (5'-D(*GP*GP*(AZW)P*GP*G)-3'), 25 mM Tris-HCl, 50 mM KCl | 100% D2O | 71 | 7.4 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | simulated annealing with cartesian angle dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
2 | structure solution | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
3 | refinement | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
4 | collection | TopSpin | 3.2 | Bruker Biospin |
5 | processing | TopSpin | 3.2 | Bruker Biospin |
6 | chemical shift assignment | Sparky | 3.114 | Goddard |
7 | data analysis | Sparky | 3.114 | Goddard |
8 | peak picking | Sparky | 3.114 | Goddard |