Chromodomain 3 (CD3) of cpSRP43
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.26 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 2 | 3D HNCA | 0.26 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 3 | 3D HNCACB | 0.26 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 4 | 3D HNCO | 0.26 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 5 | 2D 1H-13C HSQC aliphatic | 0.26 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 6 | 2D 1H-13C HSQC aromatic | 0.26 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 7 | 3D HCCH-TOCSY | 0.26 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 8 | 3D HCCH-TOCSY | 0.26 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 9 | 3D 1H-13C NOESY aliphatic | 0.8 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 10 | 3D 1H-15N NOESY | 0.8 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| 11 | 3D 1H-13C NOESY aromatic | 0.8 mM [U-100% 13C; U-100% 15N] CD3 | 90% H2O/10% D2O | 0.15 | 6.5 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 800 |
| 2 | Bruker | AVANCE III | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 9 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 2 | refinement | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
| 3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 4 | chemical shift assignment | CARA | Keller and Wuthrich | |
| 5 | data analysis | CARA | Keller and Wuthrich | |
| 6 | peak picking | CARA | Keller and Wuthrich | |
| 7 | collection | TopSpin | Bruker Biospin | |
| 8 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
