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Solution structure of the UBL domain of yeast Ddi1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 25 mM sodium phosphate, 100 mM sodium chloride, 0.4 mM [U-13C; U-15N] protein 95% H2O/5% D2O 0.1 6.5 ambient 298 2 3D HNCACB 25 mM sodium phosphate, 100 mM sodium chloride, 0.4 mM [U-13C; U-15N] protein 95% H2O/5% D2O 0.1 6.5 ambient 298 3 3D CBCA(CO)NH 25 mM sodium phosphate, 100 mM sodium chloride, 0.4 mM [U-13C; U-15N] protein 95% H2O/5% D2O 0.1 6.5 ambient 298 4 3D HCCH-TOCSY 25 mM sodium phosphate, 100 mM sodium chloride, 0.4 mM [U-13C; U-15N] protein 95% H2O/5% D2O 0.1 6.5 ambient 298 5 3D 1H-15N NOESY 25 mM sodium phosphate, 100 mM sodium chloride, 0.4 mM [U-13C; U-15N] protein 95% H2O/5% D2O 0.1 6.5 ambient 298 6 3D 1H-13C NOESY 25 mM sodium phosphate, 100 mM sodium chloride, 0.4 mM [U-13C; U-15N] protein 95% H2O/5% D2O 0.1 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics, molecular dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 43 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA Guntert, Mumenthaler and Wuthrich 2 refinement YASARA YASARA 3 refinement CYANA Guntert, Mumenthaler and Wuthrich