2N6T

NMR Assignment and NMR Structure of CssA3 (top stem) of CssA thermometer


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER)95% H2O/5% D2O6.0ambient298
22D 1H-13C HSQC0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER)95% H2O/5% D2O6.0ambient298
32D 1H-1H TOCSY0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER)95% H2O/5% D2O6.0ambient298
42D 1H-1H NOESY0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER)95% H2O/5% D2O6.0ambient298
53D HCCH-TOCSY0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER)95% H2O/5% D2O6.0ambient298
63D 1H-13C NOESY0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER)95% H2O/5% D2O6.0ambient298
72D DQF-COSY0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER)95% H2O/5% D2O6.0ambient298
8ARTSY0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER)95% H2O/5% D2O6.0ambient298
9ARTSY0.4-1.1 mM CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-uniformly labeled CssA3 RNA (42-MER), 0.4-1.1 mM 13C/15N-AU labeled CssA3 RNA (42-MER), 0.4-1.1 mM partially deuterated CssA3 RNA (42-MER)95% H2O/5% D2O6.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE600
3AgilentINOVA900
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number50
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
2refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
3collectionTopSpinBruker Biospin
4processingTopSpinBruker Biospin
5data analysisSparkyGoddard
6chemical shift assignmentSparkyGoddard
7peak pickingSparkyGoddard