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Structure of Pleiotrophin
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.6 mM [U-100% 13C; U-100% 15N] PTN, 10 % v/v D2O, 10 mM MES, 150 mM sodium chloride 90% H2O/10% D2O 0.15 6.0 ambient 298 2 3D HNCACB 0.6 mM [U-100% 13C; U-100% 15N] PTN, 10 % v/v D2O, 10 mM MES, 150 mM sodium chloride 90% H2O/10% D2O 0.15 6.0 ambient 298 3 3D CBCA(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] PTN, 10 % v/v D2O, 10 mM MES, 150 mM sodium chloride 90% H2O/10% D2O 0.15 6.0 ambient 298 4 3D H(CCO)NH 0.6 mM [U-100% 13C; U-100% 15N] PTN, 10 % v/v D2O, 10 mM MES, 150 mM sodium chloride 90% H2O/10% D2O 0.15 6.0 ambient 298 5 3D HCCH-TOCSY 0.6 mM [U-100% 13C; U-100% 15N] PTN, 10 % v/v D2O, 10 mM MES, 150 mM sodium chloride 90% H2O/10% D2O 0.15 6.0 ambient 298 6 3D 1H-15N NOESY 0.6 mM [U-100% 13C; U-100% 15N] PTN, 10 % v/v D2O, 10 mM MES, 150 mM sodium chloride 90% H2O/10% D2O 0.15 6.0 ambient 298 7 3D 1H-13C NOESY 0.6 mM [U-100% 13C; U-100% 15N] PTN, 10 % v/v D2O, 10 mM MES, 150 mM sodium chloride 90% H2O/10% D2O 0.15 6.0 ambient 298 8 3D 1H-13C NOESY 0.6 mM [U-100% 13C; U-100% 15N] PTN, 10 % v/v D2O, 10 mM MES, 150 mM sodium chloride 90% H2O/10% D2O 0.15 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Varian INOVA 800
NMR Refinement Method Details Software simulated annealing water refinement with the default protocol NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis NMRView Johnson, One Moon Scientific 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore