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Solution structure of the EBNA-2 N-terminal Dimerization (END) domain from the Epstein-barr virus
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 90% H2O/10% D2O 20 6.9 AMBIENT 323 2 2D 1H-13C HSQC 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 90% H2O/10% D2O 20 6.9 AMBIENT 323 3 3D HNCA 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 90% H2O/10% D2O 20 6.9 AMBIENT 323 4 3D HNCACB 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 90% H2O/10% D2O 20 6.9 AMBIENT 323 5 3D CBCA(CO)NH 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 90% H2O/10% D2O 20 6.9 AMBIENT 323 6 3D HCCH-TOCSY 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 90% H2O/10% D2O 20 6.9 AMBIENT 323 7 3D 1H-15N NOESY 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 90% H2O/10% D2O 20 6.9 AMBIENT 323 8 3D 1H-13C NOESY aliphatic 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 90% H2O/10% D2O 20 6.9 AMBIENT 323 9 3D 1H-13C NOESY aromatic 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 90% H2O/10% D2O 20 6.9 AMBIENT 323
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE 600 3 Bruker AVANCE 750 4 Bruker AVANCE 800 5 Bruker AVANCE 950
NMR Refinement Method Details Software TORSION ANGLE DYNAMICS, SIMULATED ANNEALING CYANA_3.0
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (low energy and fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA_3.0 Guntert, Mumenthaler and Wuthrich 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 collection, processing TopSpin Bruker Biospin 4 chemical shift assignment NMRView Johnson, One Moon Scientific 5 chemical shift assignment Sparky Goddard 6 refinement ARIA_2.2 Linge, O'Donoghue and Nilges 7 prediction of dihedral angles ARIA_2.2 Linge, O'Donoghue and Nilges