2N2J
Solution structure of the EBNA-2 N-terminal Dimerization (END) domain from the Epstein-barr virus
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 | 90% H2O/10% D2O | 20 | 6.9 | AMBIENT | 323 | |
2 | 2D 1H-13C HSQC | 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 | 90% H2O/10% D2O | 20 | 6.9 | AMBIENT | 323 | |
3 | 3D HNCA | 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 | 90% H2O/10% D2O | 20 | 6.9 | AMBIENT | 323 | |
4 | 3D HNCACB | 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 | 90% H2O/10% D2O | 20 | 6.9 | AMBIENT | 323 | |
5 | 3D CBCA(CO)NH | 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 | 90% H2O/10% D2O | 20 | 6.9 | AMBIENT | 323 | |
6 | 3D HCCH-TOCSY | 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 | 90% H2O/10% D2O | 20 | 6.9 | AMBIENT | 323 | |
7 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 | 90% H2O/10% D2O | 20 | 6.9 | AMBIENT | 323 | |
8 | 3D 1H-13C NOESY aliphatic | 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 | 90% H2O/10% D2O | 20 | 6.9 | AMBIENT | 323 | |
9 | 3D 1H-13C NOESY aromatic | 1 mM [U-13C; U-15N] EPSTEIN-BARR NUCLEAR ANTIGEN 2 | 90% H2O/10% D2O | 20 | 6.9 | AMBIENT | 323 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 600 |
3 | Bruker | AVANCE | 750 |
4 | Bruker | AVANCE | 800 |
5 | Bruker | AVANCE | 950 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
TORSION ANGLE DYNAMICS, SIMULATED ANNEALING | CYANA_3.0 |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (low energy and fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA_3.0 | Guntert, Mumenthaler and Wuthrich | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | collection, processing | TopSpin | Bruker Biospin | |
4 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
5 | chemical shift assignment | Sparky | Goddard | |
6 | refinement | ARIA_2.2 | Linge, O'Donoghue and Nilges | |
7 | prediction of dihedral angles | ARIA_2.2 | Linge, O'Donoghue and Nilges |