2N1R

NMR Structure of the Myristylated Feline Immunodeficiency Virus Matrix Protein


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
115N-1HN HSQC50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L [U-99% 15N] ammonium chloride, 4 g/L glucose, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L ammonium chloride, 4 g/L glucose, 0.5 mg/mL [U-100% 13C] MYRISTIC ACID, 90% H2O, 10% D2O90% H2O/10% D2O150mM NaCl7ambient, 1atm atm293
213C-1HN HNCA50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L [U-99% 15N] ammonium chloride, 4 g/L glucose, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L ammonium chloride, 4 g/L glucose, 0.5 mg/mL [U-100% 13C] MYRISTIC ACID, 90% H2O, 10% D2O90% H2O/10% D2O150mM NaCl7ambient, 1atm atm293
313C-1HN HN(CO)CA50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L [U-99% 15N] ammonium chloride, 4 g/L glucose, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L ammonium chloride, 4 g/L glucose, 0.5 mg/mL [U-100% 13C] MYRISTIC ACID, 90% H2O, 10% D2O90% H2O/10% D2O150mM NaCl7ambient, 1atm atm293
4CBCANH50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L [U-99% 15N] ammonium chloride, 4 g/L glucose, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L ammonium chloride, 4 g/L glucose, 0.5 mg/mL [U-100% 13C] MYRISTIC ACID, 90% H2O, 10% D2O90% H2O/10% D2O150mM NaCl7ambient, 1atm atm293
5CBCA(CO)NH50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L [U-99% 15N] ammonium chloride, 4 g/L glucose, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L ammonium chloride, 4 g/L glucose, 0.5 mg/mL [U-100% 13C] MYRISTIC ACID, 90% H2O, 10% D2O90% H2O/10% D2O150mM NaCl7ambient, 1atm atm293
6CARBON-NITROGEN NOESY (CNNOE)50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L [U-99% 15N] ammonium chloride, 4 g/L glucose, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L ammonium chloride, 4 g/L glucose, 0.5 mg/mL [U-100% 13C] MYRISTIC ACID, 90% H2O, 10% D2O90% H2O/10% D2O150mM NaCl7ambient, 1atm atm293
715N EDITED 3D NOESY50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L [U-99% 15N] ammonium chloride, 4 g/L glucose, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 1 g/L ammonium chloride, 4 g/L glucose, 0.5 mg/mL [U-100% 13C] MYRISTIC ACID, 90% H2O, 10% D2O90% H2O/10% D2O150mM NaCl7ambient, 1atm atm293
81H-13C HMQC50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L [U-100% 13C] glucose, 1 g/L ammonium chloride, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L [U-100% 13C] glucose, 1 g/L [U-99% 15N] ammonium chloride, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L glucose, 1 g/L ammonium chloride, 0.5 mg/mL MYRISTIC ACID100% D2O150mM NaCl7ambient, 1atm atm293
9CARBON CARBON NOSEY (CCNOE)50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L [U-100% 13C] glucose, 1 g/L ammonium chloride, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L [U-100% 13C] glucose, 1 g/L [U-99% 15N] ammonium chloride, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L glucose, 1 g/L ammonium chloride, 0.5 mg/mL MYRISTIC ACID100% D2O150mM NaCl7ambient, 1atm atm293
101H-1H NOESY50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L [U-100% 13C] glucose, 1 g/L ammonium chloride, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L [U-100% 13C] glucose, 1 g/L [U-99% 15N] ammonium chloride, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L glucose, 1 g/L ammonium chloride, 0.5 mg/mL MYRISTIC ACID100% D2O150mM NaCl7ambient, 1atm atm293
1113C-1H HMQC NOESY50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L [U-100% 13C] glucose, 1 g/L ammonium chloride, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L [U-100% 13C] glucose, 1 g/L [U-99% 15N] ammonium chloride, 0.5 mg/mL MYRISTIC ACID, 50 mM sodium phosphate, 150 mM sodium chloride, 10 mM DTT, 4 g/L glucose, 1 g/L ammonium chloride, 0.5 mg/mL MYRISTIC ACID100% D2O150mM NaCl7ambient, 1atm atm293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX800
2BrukerDMX600
NMR Refinement
MethodDetailsSoftware
CYANAStructures were calculated in torsion angle space with CYANA (http://www.las.jp/index_eg.html) starting from random initial angles. Upper interproton distance bounds of 2.7, 3.3 and 5.0 aE (with appropriate corrections for pseudoatoms) were employed for NOE cross peaks of strong, medium, and weak intensity respectively, which were qualitatively determined following intensity normalization of the different NOE data sets. Residual dipolar couplings were prohibited due to precipitation of the sample. No backbone hydrogen bond or chemical shift-based torsion angle restraints were employed.NMRView
NMR Ensemble Information
Conformer Selection Criteria20 structures for lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentNMRViewJohnson, One Moon Scientific
2data analysisNMRViewJohnson, One Moon Scientific
3peak pickingNMRViewJohnson, One Moon Scientific
4structure calculationCYANAGuntert, Mumenthaler and Wuthrich
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7collectionTopSpinBruker Biospin
8refinementCYANA